Community gene-panel registry and in-browser analysis workbench for
RFind-sc. Browse the catalog, score any panel against 5,998 Hammond
2019 mouse microglia cells in your browser, visualize the 10-panel landscape
as tSNE overlays and 2D scatters, and see how the panels relate in a
correlation heatmap — or contribute a new panel via a one-click pull
request.
Drop a DEG CSV, fill in a short form, and we'll open a pull request on your behalf.
—
Panel
Organism / Tissue
Type
n_up / n_down
Citation
Visualize — see all 10 bundled microglia panels as signed RFind scores
on Hammond 2019 (5,998 cells, 7 developmental / perturbation groups).
Pick a panel for the tSNE color overlay or two panels for a 2D scatter;
RFind's signed score populates all four quadrants of the plane, which
AUCell / UCell can not do natively.
Signed scores on each axis mean each quadrant has distinct biological meaning:
upper-right = case-like on both panels, lower-left = control-like on both, etc.
Compare — how the 10 bundled panels relate on Hammond 2019. The
Spearman correlation heatmap shows which panels carry overlapping signal
(highly correlated) vs. independent signal (weakly correlated). Strong
off-diagonal blocks reveal biological clusters among the panels.
Correlation is computed across all 5,998 cells for each (panel × panel) pair.
Red = positive Spearman, blue = negative, white = zero.
Contribute a panel
Upload a DEG table (Symbol + log2FC columns), fill in a short form,
and submit. We'll fork tmurano/rfind-panels on your
GitHub account and open a pull request automatically.
1Upload your DEG table
Drop a CSV/TSV here, or click to choose a file
Required columns: Symbol (or gene) + log2FC (or fold change)
2Panel metadata
lowercase, snake_case, unique in registry
auto-detected from gene symbol casing
auto-detected from presence of DOWN genes
leave blank for gene_set type
3Authenticate and submit
First time? You need a GitHub Personal Access Token (PAT) —
it's like a password your browser uses to open the pull request for you.
Create one here
(scope public_repo is pre-filled). Click Generate token
at the bottom, copy the ghp_... string, paste it below.
⚠️ You can only view the token once — copy it before closing that GitHub page.
Don't have one? Create a classic PAT with the public_repo scope at
github.com/settings/tokens/new
(30 seconds). The token is stored only in your browser's localStorage and is sent only to api.github.com.